PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017496m
Common NameEUTSA_v10017496mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8123.87 Da    PI: 10.7983
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017496mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.61.2e-42876270
             S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     ++a++eakGlnPGlivllvvggll++fl++ny++y+yaqk+lPP+kkkP+skkklkreklkqGv+vPGe
  Thhalv10017496m  8 GKAAAEAKGLNPGLIVLLVVGGLLVTFLIANYVMYMYAQKTLPPKKKKPISKKKLKREKLKQGVPVPGE 76
                     57899***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046899.5E-391276IPR006779DNA binding protein S1FA
ProDomPD0190130.0033376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSSEGSAGKA AAEAKGLNPG LIVLLVVGGL LVTFLIANYV MYMYAQKTLP PKKKKPISKK  60
KLKREKLKQG VPVPGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3728923e-83AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBankAY0854393e-83AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBankBT0026693e-83BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410892.13e-46hypothetical protein EUTSA_v10017496mg
SwissprotQ423371e-29S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLV4LP384e-46V4LP38_EUTSA; Uncharacterized protein
STRINGAT2G37120.13e-27(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.15e-07S1FA-like DNA-binding protein